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arXiv · 0803.0888

Matrix genetics, part 1: permutations of positions in triplets and symmetries of genetic matrices

Sergey V. Petoukhov
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Abstract

The Kronecker family of the genetic matrices is investigated, which is based on the genetic matrix [C T; A G], where C, T, A, G are the letters of the genetic alphabet. The matrix [C T; A G] in the second Kronecker power is the (4*4)-matrix of 16 duplets. The matrix [C T; A G] in the third Kronecker power is the (8*8)-matrix of 64 triplets. It is significant that peculiarities of the degeneracy of the genetic code are reflected in the symmetrical black-and-white mosaic of these genetic matrices. The article represents interesting mathematical properties of these mosaic matrices, which are connected with positional permutations inside duplets and triplets; with projector operators; with unitary matrices and cyclic groups, etc. Fractal genetic nets are proposed as a new effective tool to study long nucleotide sequences. Some results about revealing new symmetry principles of long nucleotide sequences are described.

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Sergey V. Petoukhov. 2013-01-16. Matrix genetics, part 1: permutations of positions in triplets and symmetries of genetic matrices. https://arxiv.org/abs/0803.0888

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