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arXiv · 1001.1278

On Critical Relative Distance of DNA Codes for Additive Stem Similarity

A. D'yachkov·A. Voronina·A. Macula·T. Renz·V. Rykov
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Abstract

We consider DNA codes based on the nearest-neighbor (stem) similarity model which adequately reflects the "hybridization potential" of two DNA sequences. Our aim is to present a survey of bounds on the rate of DNA codes with respect to a thermodynamically motivated similarity measure called an additive stem similarity. These results yield a method to analyze and compare known samples of the nearest neighbor "thermodynamic weights" associated to stacked pairs that occurred in DNA secondary structures.

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A. D'yachkov, A. Voronina, A. Macula, T. Renz, V. Rykov. 2010-01-08. On Critical Relative Distance of DNA Codes for Additive Stem Similarity. https://doi.org/10.1109/isit.2010.5513751

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