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arXiv · 1011.1724

A time-dependent Poisson random field model for polymorphism within and between two related biological species

Amei Amei·Stanley Sawyer
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Abstract

We derive a Poisson random field model for population site polymorphisms differences within and between two species that share a relatively recent common ancestor. The model can be either equilibrium or time inhomogeneous. We first consider a random field of Markov chains that describes the fate of a set of individual mutations. This field is approximated by a Poisson random field from which we can make inferences about the amounts of mutation and selection that have occurred in the history of observed aligned DNA sequences.

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Amei Amei, Stanley Sawyer. 2010-11-08. A time-dependent Poisson random field model for polymorphism within and between two related biological species. https://doi.org/10.1214/09-aap668

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