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arXiv · 1202.2670

CSA: Comprehensive comparison of pairwise protein structure alignments

Inken Wohlers·Noël Malod-Dognin·Rumen Andonov·Gunnar W. Klau
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Abstract

CSA is a web server for the comprehensive comparison of pairwise protein structure alignments. Its exact alignment engine computes either optimal, top-scoring alignments or heuristic alignments with quality guarantee for the inter-residue distance based scorings of contact map overlap, PAUL, DALI and MATRAS. These and additional, uploaded alignments are compared using a number of quality measures and intuitive visualizations. CSA brings new insight into the structural relationship of the protein pairs under investigation and is a valuable tool for studying structural similarities. It is available at http://csa.project.cwi.nl

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Inken Wohlers, Noël Malod-Dognin, Rumen Andonov, Gunnar W. Klau. 2012-02-13. CSA: Comprehensive comparison of pairwise protein structure alignments. https://arxiv.org/abs/1202.2670

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