Some results on more flexible versions of Graph Motif

Romeo Rizzi; Florian Sikora

doi:10.1007/s00224-014-9564-6

Home/Archive/arXiv

arXiv · 1202.5184

Some results on more flexible versions of Graph Motif

Romeo Rizzi·Florian Sikora

View original source ↗Read source document ↗Export metadata ↓

Abstract

The problems studied in this paper originate from Graph Motif, a problem introduced in 2006 in the context of biological networks. Informally speaking, it consists in deciding if a multiset of colors occurs in a connected subgraph of a vertex-colored graph. Due to the high rate of noise in the biological data, more flexible definitions of the problem have been outlined. We present in this paper two inapproximability results for two different optimization variants of Graph Motif: one where the size of the solution is maximized, the other when the number of substitutions of colors to obtain the motif from the solution is minimized. We also study a decision version of Graph Motif where the connectivity constraint is replaced by the well known notion of graph modularity. While the problem remains NP-complete, it allows algorithms in FPT for biologically relevant parameterizations.

Explore related subjects

cs.CC

Keep this discovery

BibTeX RIS

Romeo Rizzi, Florian Sikora. 2014-09-10. Some results on more flexible versions of Graph Motif. https://doi.org/10.1007/s00224-014-9564-6

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

arXiv2026

The Computational Complexity of Holant Problems on 4-regular Graphs from the Stable Subgroup Sequence of $SL(2,\mathbb{C})$

The Holant framework provides a general setting for studying counting problems and includes graph homomorphisms (\#GH) and counting constraint satisfaction problems (\#CSP) as special cases. Over the past twenty years, a series of computational complexity dichotomies have been established for Holant problems, but the classification for complex-valued signatures is still open. The main obstacle is the case in which all signatures have even arity. In this paper, we establish a dichotomy for Holant problems with a complex-valued 4-ary signature, which is a key base case for the full classification of Holant problems. We present a new strategy by introducing Schur's theorem, the classification of finite subgroups of $\mathrm{SL}(2,\mathbb{C})$ and stable subgroup sequences into the proof. These new techniques are of independent interest.

cs.CC↗

arXiv2026

Max Independent Set Remains NP-hard when Excluding a Planar Induced Minor

We show that there is a fixed planar graph $H$, namely the $5 \times 5$ grid, such that Max Independent Set remains NP-hard in $H$-induced-minor-free graphs. This refutes the Dallard--Milani\v{c}--\v{S}torgel conjecture and a weakening of it by Gartland and Lokshtanov, and by Korhonen.

cs.CC↗

arXiv2026

Topology inside NC$^1$

We show that ACC$^0$ is precisely what can be computed with constant-width circuits of polynomial size and polylogarithmic genus. This extends a characterization given by Hansen, showing that planar constant-width circuits also characterize ACC$^0$. Thus polylogarithmic genus provides no additional computational power in this model. We consider other generalizations of planarity, including crossing number and thickness. We show that constant-width circuits of polynomial size and thickness two already suffice to capture all of NC$^1$.

cs.CC↗