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arXiv · 1205.6359

Extracting Conflict-free Information from Multi-labeled Trees

Akshay Deepak·David Fernández-Baca·Michelle M. McMahon
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Abstract

A multi-labeled tree, or MUL-tree, is a phylogenetic tree where two or more leaves share a label, e.g., a species name. A MUL-tree can imply multiple conflicting phylogenetic relationships for the same set of taxa, but can also contain conflict-free information that is of interest and yet is not obvious. We define the information content of a MUL-tree T as the set of all conflict-free quartet topologies implied by T, and define the maximal reduced form of T as the smallest tree that can be obtained from T by pruning leaves and contracting edges while retaining the same information content. We show that any two MUL-trees with the same information content exhibit the same reduced form. This introduces an equivalence relation in MUL-trees with potential applications to comparing MUL-trees. We present an efficient algorithm to reduce a MUL-tree to its maximally reduced form and evaluate its performance on empirical datasets in terms of both quality of the reduced tree and the degree of data reduction achieved.

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Akshay Deepak, David Fernández-Baca, Michelle M. McMahon. 2012-05-29. Extracting Conflict-free Information from Multi-labeled Trees. https://arxiv.org/abs/1205.6359

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