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arXiv · 1304.5947

How Cations Change Peptide Structure

Carsten Baldauf·Kevin Pagel·Stephan Warnke·Gert von Helden·Beate Koksch·Volker Blum·Matthias Scheffler
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Abstract

Specific interactions between cations and proteins have a strong impact on peptide and protein structure. We here shed light on the nature of the underlying interactions, especially regarding the effects on the polyamide backbone structure. To do so, we compare the conformational ensembles of model peptides in isolation and in the presence of either Li+ or Na+ cations by state-of-the-art density-functional theory (including van der Waals effects) and gas-phase infrared spectroscopy. These monovalent cations have a drastic effect on the local backbone conformation of turn-forming peptides, by disruption of the H bonding networks and the resulting severe distortion of the backbone conformations. In fact, Li+ and Na+ can even have different conformational effects on the same peptide. We also assess the predictive power of current approximate density functionals for peptide-cation systems and compare to results from established protein force fields as well as to high-level quantum chemistry (CCSD(T)).

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Carsten Baldauf, Kevin Pagel, Stephan Warnke, Gert von Helden, Beate Koksch, Volker Blum, Matthias Scheffler. 2013-04-29. How Cations Change Peptide Structure. https://doi.org/10.1002/chem.201204554

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