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arXiv · 1305.5319

Effect of Genetic Variation in a Drosophila Model of Diabetes-Associated Misfolded Human Proinsulin

Bin Z. He·Michael Z. Ludwig·Desiree A. Dickerson·Levi Barse·Bharath Arun·Soo Young Park·Natalia A. Tamarina·Scott B. Selleck·Patricia Wittkopp·Graeme I. Bell·Martin Kreitman
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Abstract

The identification and validation of gene-gene interactions is a major challenge in human studies. Here, we explore an approach for studying epistasis in humans using a Drosophila melanogaster model of neonatal diabetes mellitus. Expression of mutant preproinsulin, hINSC96Y, in the eye imaginal disc mimics the human disease activating conserved cell stress response pathways leading to cell death and reduction in eye area. Dominant-acting variants in wild-derived inbred lines from the Drosophila Genetics Reference Panel produce a continuous, highly heritable, distribution of eye degeneration phenotypes. A genome-wide association study (GWAS) in 154 sequenced lines identified 29 candidate SNPs in 16 loci with P < 10-5 including one SNP in an intron of the gene sulfateless (sfl) which exceeded a conservative genome-wide significance threshold of P = 0.05 level (-log10 P > 7.62). RNAi knock-downs of sfl enhanced the eye degeneration phenotype in a mutant-hINS-dependent manner. sfl encodes a protein required for sulfation of the glycosaminoglycan, heparan sulfate. Two additional genes in the heparan sulfate (HS) biosynthetic pathway (tout velu, ttv and brother of tout velu, botv) also modified the eye phenotype, suggesting a link between HS-modified proteins and cellular responses to misfolded proteins. Finally, intronic variants marking the QTL were associated with decreased sfl expression, a result consistent with that predicted by RNAi studies. The ability to create a model of human genetic disease in the fly, map a QTL by GWAS to a specific gene (and noncoding variant), validate its contribution to disease with available genetic resources, and experimentally link the variant to a molecular mechanism, demonstrate the many advantages Drosophila holds in determining the genetic underpinnings of human disease.

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Bin Z. He, Michael Z. Ludwig, Desiree A. Dickerson, Levi Barse, Bharath Arun, Soo Young Park, Natalia A. Tamarina, Scott B. Selleck, Patricia Wittkopp, Graeme I. Bell, Martin Kreitman. 2013-05-27. Effect of Genetic Variation in a Drosophila Model of Diabetes-Associated Misfolded Human Proinsulin. https://doi.org/10.1534/genetics.113.157800

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