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arXiv · 1311.1241

Comparative Assembly Hubs: Web Accessible Browsers for Comparative Genomics

Ngan Nguyen·Glenn Hickey·Brian J. Raney·Joel Armstrong·Hiram Clawson·Ann Zweig·Jim Kent·David Haussler·Benedict Paten
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Abstract

We introduce a pipeline to easily generate collections of web accessible UCSC genome browsers interrelated by an alignment. Using the alignment, all annotations and the alignment itself can be efficiently viewed with reference to any genome in the collection, symmetrically. A new, intelligently scaled alignment display makes it simple to view all changes between the genomes at all levels of resolution, from substitutions to complex structural rearrangements, including duplications.

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Ngan Nguyen, Glenn Hickey, Brian J. Raney, Joel Armstrong, Hiram Clawson, Ann Zweig, Jim Kent, David Haussler, Benedict Paten. 2013-11-05. Comparative Assembly Hubs: Web Accessible Browsers for Comparative Genomics. https://arxiv.org/abs/1311.1241

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