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arXiv · 1403.2658

Pairwise alignment of the DNA sequence using hypercomplex number representation

Jian-Jun Shu·Li Shan Ouw
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Abstract

A new set of DNA base-nucleic acid codes and their hypercomplex number representation have been introduced for taking the probability of each nucleotide into full account. A new scoring system has been proposed to suit the hypercomplex number representation of the DNA base-nucleic acid codes and incorporated with the method of dot matrix analysis and various algorithms of sequence alignment. The problem of DNA sequence alignment can be processed in a rather similar way as pairwise alignment of protein sequence.

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Jian-Jun Shu, Li Shan Ouw. 2014-03-09. Pairwise alignment of the DNA sequence using hypercomplex number representation. https://doi.org/10.1016/j.bulm.2004.01.005

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