Dissipation in noisy chemical networks: The role of deficiency

Matteo Polettini; Artur Wachtel; Massimiliano Esposito

doi:10.1063/1.4935064

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arXiv · 1507.00058

Dissipation in noisy chemical networks: The role of deficiency

Matteo Polettini·Artur Wachtel·Massimiliano Esposito

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Abstract

We study the effect of intrinsic noise on the thermodynamic balance of complex chemical networks subtending cellular metabolism and gene regulation. A topological network property called deficiency, known to determine the possibility of complex behavior such as multistability and oscillations, is shown to also characterize the entropic balance. In particular, only when deficiency is zero does the average stochastic dissipation rate equal that of the corresponding deterministic model, where correlations are disregarded. In fact, dissipation can be reduced by the effect of noise, as occurs in a toy model of metabolism that we employ to illustrate our findings. This phenomenon highlights that there is a close interplay between deficiency and the activation of new dissipative pathways at low molecule numbers.

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Matteo Polettini, Artur Wachtel, Massimiliano Esposito. 2015-11-11. Dissipation in noisy chemical networks: The role of deficiency. https://doi.org/10.1063/1.4935064

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