Systematic Measures of Biological Networks, Part II: Degeneracy, Complexity and Robustness

Yao Li; Yingfei Yi

Home/Archive/arXiv

arXiv · 1601.00715

Systematic Measures of Biological Networks, Part II: Degeneracy, Complexity and Robustness

Yao Li·Yingfei Yi

View original source ↗Read source document ↗Export metadata ↓

Abstract

This paper is Part II of a two-part series devoting to the study of systematic measures in a complex bio-network modeled by a system of ordinary differential equations. In this part, we quantify several systematic measures of a biological network including degeneracy, complexity and robustness. We will apply the theory of stochastic differential equations to define degeneracy and complexity for a bio-network. Robustness of the network will be defined according to the strength of attractions to the global attractor. Based on the study of stationary probability measures and entropy made in Part I of the series, we will investigate some fundamental properties of these systematic measures, in particular the connections between degeneracy, complexity and robustness.

Explore related subjects

math.PR math.DS

Keep this discovery

Explore connections, maps & timelines

BibTeX RIS

Yao Li, Yingfei Yi. 2016-06-10. Systematic Measures of Biological Networks, Part II: Degeneracy, Complexity and Robustness. https://arxiv.org/abs/1601.00715

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

arXiv2026

Averaging principles for nonautonomous multiscale stochastic Burgers equations with reflection

In this paper, we study averaging principles for nonautonomous multiscale stochastic Burgers equations with reflection. First, we derive a general averaging principle applicable to such equations under minimal assumptions. Subsequently, since the coefficients of the obtained averaged equation still depend on the small scaling parameter $\e$, we impose either periodic or asymptotic conditions on the coefficients, thereby obtain two distinct averaged equations whose coefficients are independent of $\e$ and establish two averaging principles. Stopping times and Khasminskii's time discretization schemes play an important role. Finally, a concrete example is provided to illustrate the applicability and validity of the theoretical results.

math.PR↗

arXiv2026

Spectral properties of Random Matrices

We give the theoretical foundations of random matrix theory through the definitions of a random matrix, a random probability measure and the corresponding empirical spectral distribution. The technical tool we use is the Stieltjes transform method through which we prove optimal convergence of the empirical spectral distribution of random sample covariance matrices to the deterministic Marchenko-Pastur distribution. We also give new results about the rigidity of the eigenvalues of this random sample covariance matrix and the rate of their convergence. We then define the Dyson equation method to prove new local laws about a random matrix model that interpolates between the Marchenko-Pastur distribution, the elliptical law and the circular law. Through our work these local laws can be considered universal.

math.PR↗

arXiv2026

Moments approach for the elephant random walk

We discuss the method of moments for the one-dimensional elephant random walk (ERW). We first derive a differential recurrence relation for the characteristic function of the ERW, which yields a corresponding system of recurrence relations for its moments. We then obtain asymptotic approximations for the moments in each of the three parameter regimes of the ERW. Finally, by establishing the convergence of the moments and verifying the corresponding moment-determinacy conditions, we identify the limiting distributions of the ERW in each regime.

math.PR↗