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arXiv · 1604.06783

PyPanda: a Python Package for Gene Regulatory Network Reconstruction

David G. P. van IJzendoorn·Kimberly Glass·John Quackenbush·Marieke L. Kuijjer
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Abstract

PANDA (Passing Attributes between Networks for Data Assimilation) is a gene regulatory network inference method that uses message-passing to integrate multiple sources of 'omics data. PANDA was originally coded in C++. In this application note we describe PyPanda, the Python version of PANDA. PyPanda runs considerably faster than the C++ version and includes additional features for network analysis. Availability: The open source PyPanda Python package is freely available at https://github.com/davidvi/pypanda. Contact: d.g.p.van ijzendoorn@lumc.nl

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David G. P. van IJzendoorn, Kimberly Glass, John Quackenbush, Marieke L. Kuijjer. 2016-07-12. PyPanda: a Python Package for Gene Regulatory Network Reconstruction. https://doi.org/10.1093/bioinformatics%2Fbtw422

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