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arXiv · 1608.04433

HVC Interneuron Properties from Statistical Data Assimilation

Daniel Breen·Sasha Shirman·Eve Armstrong·Nirag Kadakia·Henry Abarbanel
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Abstract

Data assimilation (DA) solves the inverse problem of inferring initial conditions given data and a model. Here we use biophysically motivated Hodgkin-Huxley (HH) models of avian HVCI neurons, experimentally obtained recordings of these neurons, and our data assimilation algorithm to infer the full set of parameters and a minimal set of ionic currents precisely reproducing the observed waveform information. We find many distinct validated sets of parameters selected by our DA method and choice of model. We conclude exploring variations on the inverse problem applied to neurons producing accurate or inaccurate results; by manipulating data presented to the algorithm, varying sample rate and waveform; and by manipulating the model by adding and subtracting ionic currents.

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Daniel Breen, Sasha Shirman, Eve Armstrong, Nirag Kadakia, Henry Abarbanel. 2016-08-15. HVC Interneuron Properties from Statistical Data Assimilation. https://arxiv.org/abs/1608.04433

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