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arXiv · 1611.04743

DistributedFBA.jl: High-level, high-performance flux balance analysis in Julia

Laurent Heirendt·Ronan M. T. Fleming·Ines Thiele
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Abstract

Motivation: Flux balance analysis, and its variants, are widely used methods for predicting steady-state reaction rates in biochemical reaction networks. The exploration of high dimensional networks with such methods is currently hampered by software performance limitations. Results: DistributedFBA.jl is a high-level, high-performance, open-source implementation of flux balance analysis in Julia. It is tailored to solve multiple flux balance analyses on a subset or all the reactions of large and huge-scale networks, on any number of threads or nodes. Availability: The code and benchmark data are freely available on http://github.com/opencobra/COBRA.jl. The documentation can be found at http://opencobra.github.io/COBRA.jl

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Laurent Heirendt, Ronan M. T. Fleming, Ines Thiele. 2016-11-15. DistributedFBA.jl: High-level, high-performance flux balance analysis in Julia. https://arxiv.org/abs/1611.04743

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