Topological Line Defects around Graphene Nanopores for DNA Sequencing

Jariyanee Prasongkit; Ernane F. Martins; Fábio A. L. de Souza; Wanderlã L. Scopel; Rodrigo G. Amorim; Vittaya Amornkitbamrung; Alexandre R. Rocha; Ralph H. Scheicher

arXiv · 1712.02094

Topological Line Defects around Graphene Nanopores for DNA Sequencing

Jariyanee Prasongkit·Ernane F. Martins·Fábio A. L. de Souza·Wanderlã L. Scopel·Rodrigo G. Amorim·Vittaya Amornkitbamrung·Alexandre R. Rocha·Ralph H. Scheicher

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Abstract

Topological line defects in graphene represent an ideal way to produce highly controlled structures with reduced dimensionality that can be used in electronic devices. In this work we propose using extended line defects in graphene to improve nucleobase selectivity in nanopore-based DNA sequencing devices. We use a combination of QM/MM and non-equilibrium Green's functions methods to investigate the conductance modulation, fully accounting for solvent effects. By sampling over a large number of different orientations generated from molecular dynamics simulations, we theoretically demonstrate that distinguishing between the four nucleobases using line defects in a graphene-based electronic device appears possible. The changes in conductance are associated with transport across specific molecular states near the Fermi level and their coupling to the pore. Through the application of a specifically tuned gate voltage, such a device would be able to discriminate the four types of nucleobases more reliably than that of graphene sensors without topological line defects.

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Jariyanee Prasongkit, Ernane F. Martins, Fábio A. L. de Souza, Wanderlã L. Scopel, Rodrigo G. Amorim, Vittaya Amornkitbamrung, Alexandre R. Rocha, Ralph H. Scheicher. 2017-12-06. Topological Line Defects around Graphene Nanopores for DNA Sequencing. https://arxiv.org/abs/1712.02094

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