SearcharxivSearch

arXiv · 1807.11397

Disorder and denaturation transition in the generalized Poland-Scheraga model

Abstract

We investigate the generalized Poland-Scheraga model, which is used in the bio-physical literature to model the DNA denaturation transition, in the case where the two strands are allowed to be non-complementary (and to have different lengths). The homogeneous model was recently studied from a mathematical point of view in Giacomin, Khatib (Stoch. Proc. Appl., 2017), via a $2$-dimensional renewal approach, with a loop exponent $2+\alpha$ (${\alpha>0}$): it was found to undergo a localization/delocalization phase transition of order $\nu = \min(1,\alpha)^{-1}$, together with -- in general -- other phase transitions. In this paper, we turn to the disordered model, and we address the question of the influence of disorder on the denaturation phase transition, that is whether adding an arbitrarily small amount of disorder (i.e. inhomogeneities) affects the critical properties of this transition. Our results are consistent with Harris' predictions for $d$-dimensional disordered systems (here $d=2$). First, we prove that when $\alpha<1$ (i.e. $\nu>d/2$), then disorder is irrelevant: the quenched and annealed critical points are equal, and the disordered denaturation phase transition is also of order $\nu=\alpha^{-1}$. On the other hand, when $\alpha>1$, disorder is relevant: we prove that the quenched and annealed critical points differ. Moreover, we discuss a number of open problems, in particular the smoothing phenomenon that is expected to enter the game when disorder is relevant.

Explore related subjects

Keep this discovery

BibTeXRIS

Quentin Berger, Giambattista Giacomin, Maha Khatib. 2018-07-30. Disorder and denaturation transition in the generalized Poland-Scheraga model. https://arxiv.org/abs/1807.11397

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

Averaging principles for nonautonomous multiscale stochastic Burgers equations with reflection

In this paper, we study averaging principles for nonautonomous multiscale stochastic Burgers equations with reflection. First, we derive a general averaging principle applicable to such equations under minimal assumptions. Subsequently, since the coefficients of the obtained averaged equation still depend on the small scaling parameter $\e$, we impose either periodic or asymptotic conditions on the coefficients, thereby obtain two distinct averaged equations whose coefficients are independent of $\e$ and establish two averaging principles. Stopping times and Khasminskii's time discretization schemes play an important role. Finally, a concrete example is provided to illustrate the applicability and validity of the theoretical results.

math.PR

Spectral properties of Random Matrices

We give the theoretical foundations of random matrix theory through the definitions of a random matrix, a random probability measure and the corresponding empirical spectral distribution. The technical tool we use is the Stieltjes transform method through which we prove optimal convergence of the empirical spectral distribution of random sample covariance matrices to the deterministic Marchenko-Pastur distribution. We also give new results about the rigidity of the eigenvalues of this random sample covariance matrix and the rate of their convergence. We then define the Dyson equation method to prove new local laws about a random matrix model that interpolates between the Marchenko-Pastur distribution, the elliptical law and the circular law. Through our work these local laws can be considered universal.

math.PR

Moments approach for the elephant random walk

We discuss the method of moments for the one-dimensional elephant random walk (ERW). We first derive a differential recurrence relation for the characteristic function of the ERW, which yields a corresponding system of recurrence relations for its moments. We then obtain asymptotic approximations for the moments in each of the three parameter regimes of the ERW. Finally, by establishing the convergence of the moments and verifying the corresponding moment-determinacy conditions, we identify the limiting distributions of the ERW in each regime.

math.PR