Searcharxiv⌕ Search
Home/Archive/arXiv

arXiv · 1902.05855

Tree decomposition of Reeb graphs, parametrized complexity, and applications to phylogenetics

Anastasios Stefanou
View original source ↗Read source document ↗Export metadata ↓

Abstract

Inspired by the interval decomposition of persistence modules and the extended Newick format of phylogenetic networks, we show that, inside the larger category of \textit{ordered Reeb graphs}, every Reeb graph with $n$ leaves and first Betti number $s$, is equal to a coproduct of at most $2^s$ trees with $(n + s)$ leaves. Reeb graphs are therefore classified up to isomorphism by their tree decomposition. An implication of this result, is that the isomorphism problem for Reeb graphs is fixed parameter tractable when the parameter is the first Betti number. We propose ordered Reeb graphs as a model for time consistent phylogenetic networks and propose a certain Hausdorff distance as a metric on these structures.

Explore related subjects

math.AT

Keep this discovery

BibTeXRIS

Anastasios Stefanou. 2019-02-15. Tree decomposition of Reeb graphs, parametrized complexity, and applications to phylogenetics. https://arxiv.org/abs/1902.05855

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

arXiv2026

Homogeneous Milnor fibers and Kato--Matsumoto bounds via simplicial multiwedges

For every $n\geq 3$ and $s\geq 2$, we construct a homogeneous polynomial of degree $n(n+1)/2$ whose Milnor fiber is exactly $2s$-connected and whose rational cohomology contains a strictly defined nontrivial $n$-fold Massey product on classes of degree $2s+1$, implying that the Milnor fiber is non-formal, while attaining the Kato--Matsumoto connectivity bound. Our construction is based on the simplicial multiwedges of the nerve complexes of simple polytopes introduced by Limonchenko, combined with Suciu's realization of weighted homogeneous Milnor fibers. We thereby answer two problems posed by Suciu.

math.AT↗
arXiv2026

The homotopy types of directed path and trace spaces

We construct a saturated directed space with a Hausdorff $\Delta$-generated underlying space and two distinct points such that the trace space between them is homeomorphic to a square, whereas the directed path space has a nontrivial fundamental group. In particular, the canonical quotient map is not a weak homotopy equivalence. The same conclusion holds for regular directed paths modulo increasing homeomorphisms.

math.AT↗
arXiv2026

Moduli spaces of geometric functorial field theories

We develop tools to compute moduli spaces of geometric functorial field theories as mapping spaces of equivariant simplicial presheaves. Given a d-dimensional geometric structure F, presented as a presheaf on the site of smooth families of d-manifolds, we define its Cartesian realization, which is an O(d)-equivariant simplicial presheaf on the site of Cartesian spaces. We use Cartesian realizations to present the moduli space of functorial field theories with geometric structure F as a mapping space between O(d)-equivariant simplicial presheaves. In a companion paper, we use this result to compute the moduli space of smooth one-dimensional oriented Riemannian functorial field theories valued in an arbitrary smooth symmetric monoidal infinity-category.

math.AT↗