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arXiv · 1905.08575

Exploring the effects of Lx-norm penalty terms in multivariate curve resolution methods for resolving LC/GC-MS data

Ahmad Mani-Varnosfaderani·Mohammad Javad Masroor
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Abstract

There are different problems for resolution of complex LC-MS or GC-MS data, such as the existence of embedded chromatographic peaks, continuum background and overlapping in mass channels for different components. These problems cause rotational ambiguity in recovered profiles calculated using multivariate curve resolution (MCR) methods. Since mass spectra are sparse in nature, sparsity has been proposed recently as a constraint in MCR methods for analyzing LC-MS data. There are different ways for implementation of the sparsity constraint, and majority of methods rely on imposing a penalty based on the L0-, L1- and L2-norms of recovered mass spectra. Ridge regression and least absolute shrinkage and selection operator (Lasso) can be used for implementation of L2- and L1-norm penalties in MCR, respectively. The main question is which Lx-norm penalty is more worthwhile for implementation of the sparsity constraint in MCR methods. In order to address this question, two and three component LC-MS data were simulated and used for the case study in this work. The areas of feasible solutions (AFS) were calculated using the grid search strategy. Calculating Lx-norms values in AFS for x between zero and two revealed that the gradient of optimization surface increased from x values equal to two to x values near zero. However, for x equal to zero, the optimization surface was similar to a plateau, which increased the risk of sticking in local minima. Generally, results in this work, recommend the use of L1-norm penalty methods like Lasso for implementation of sparsity constraint in MCR-ALS algorithm for finding more sparse solutions and reducing the extent of rotational ambiguity.

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Ahmad Mani-Varnosfaderani, Mohammad Javad Masroor. 2019-05-21. Exploring the effects of Lx-norm penalty terms in multivariate curve resolution methods for resolving LC/GC-MS data. https://arxiv.org/abs/1905.08575

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