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arXiv · 1907.02241

Bayesian Regularization of Gaussian Graphical Models with Measurement Error

Michael Byrd·Linh Nghiem·Monnie McGee
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Abstract

We consider a framework for determining and estimating the conditional pairwise relationships of variables when the observed samples are contaminated with measurement error in high dimensional settings. Assuming the true underlying variables follow a multivariate Gaussian distribution, if no measurement error is present, this problem is often solved by estimating the precision matrix under sparsity constraints. However, when measurement error is present, not correcting for it leads to inconsistent estimates of the precision matrix and poor identification of relationships. We propose a new Bayesian methodology to correct for the measurement error from the observed samples. This Bayesian procedure utilizes a recent variant of the spike-and-slab Lasso to obtain a point estimate of the precision matrix, and corrects for the contamination via the recently proposed Imputation-Regularization Optimization procedure designed for missing data. Our method is shown to perform better than the naive method that ignores measurement error in both identification and estimation accuracy. To show the utility of the method, we apply the new method to establish a conditional gene network from a microarray dataset.

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Michael Byrd, Linh Nghiem, Monnie McGee. 2019-07-04. Bayesian Regularization of Gaussian Graphical Models with Measurement Error. https://arxiv.org/abs/1907.02241

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