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arXiv · 2009.12413

Maximum Covering Subtrees for Phylogenetic Networks

Nathan Davidov·Amanda Hernandez·Justin Jian·Patrick McKenna·K. A. Medlin·Roadra Mojumder·Megan Owen·Andrew Quijano·Amanda Rodriguez·Katherine St. John·Katherine Thai·Meliza Uraga
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Abstract

Tree-based phylogenetic networks, which may be roughly defined as leaf-labeled networks built by adding arcs only between the original tree edges, have elegant properties for modeling evolutionary histories. We answer an open question of Francis, Semple, and Steel about the complexity of determining how far a phylogenetic network is from being tree-based, including non-binary phylogenetic networks. We show that finding a phylogenetic tree covering the maximum number of nodes in a phylogenetic network can be be computed in polynomial time via an encoding into a minimum-cost maximum flow problem.

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Nathan Davidov, Amanda Hernandez, Justin Jian, Patrick McKenna, K. A. Medlin, Roadra Mojumder, Megan Owen, Andrew Quijano, Amanda Rodriguez, Katherine St. John, Katherine Thai, Meliza Uraga. 2020-09-25. Maximum Covering Subtrees for Phylogenetic Networks. https://doi.org/10.1109/tcbb.2020.3040910

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