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arXiv · 2012.00109

Defining phylogenetic networks using ancestral profiles

Allan Bai·Peter Erdos·Charles Semple·Mike Steel
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Abstract

Rooted phylogenetic networks provide a more complete representation of the ancestral relationship between species than phylogenetic trees when reticulate evolutionary processes are at play. One way to reconstruct a phylogenetic network is to consider its `ancestral profile' (the number of paths from each ancestral vertex to each leaf). In general, this information does not uniquely determine the underlying phylogenetic network. A recent paper considered a new class of phylogenetic networks called `orchard networks' where this uniqueness was claimed to hold. Here we show that an additional restriction on the network, that of being `stack-free', is required in order for the original uniqueness claim to hold. On the other hand, if the additional stack-free restriction is lifted, we establish an alternative result; namely, there is uniqueness within the class of orchard networks up to the resolution of vertices of high in-degree.

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Allan Bai, Peter Erdos, Charles Semple, Mike Steel. 2020-11-30. Defining phylogenetic networks using ancestral profiles. https://arxiv.org/abs/2012.00109

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