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arXiv · 2012.00131

HydroNet: Benchmark Tasks for Preserving Intermolecular Interactions and Structural Motifs in Predictive and Generative Models for Molecular Data

Sutanay Choudhury·Jenna A. Bilbrey·Logan Ward·Sotiris S. Xantheas·Ian Foster·Joseph P. Heindel·Ben Blaiszik·Marcus E. Schwarting
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Abstract

Intermolecular and long-range interactions are central to phenomena as diverse as gene regulation, topological states of quantum materials, electrolyte transport in batteries, and the universal solvation properties of water. We present a set of challenge problems for preserving intermolecular interactions and structural motifs in machine-learning approaches to chemical problems, through the use of a recently published dataset of 4.95 million water clusters held together by hydrogen bonding interactions and resulting in longer range structural patterns. The dataset provides spatial coordinates as well as two types of graph representations, to accommodate a variety of machine-learning practices.

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Sutanay Choudhury, Jenna A. Bilbrey, Logan Ward, Sotiris S. Xantheas, Ian Foster, Joseph P. Heindel, Ben Blaiszik, Marcus E. Schwarting. 2020-11-30. HydroNet: Benchmark Tasks for Preserving Intermolecular Interactions and Structural Motifs in Predictive and Generative Models for Molecular Data. https://arxiv.org/abs/2012.00131

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