Automated lung segmentation from CT images of normal and COVID-19 pneumonia patients

Faeze Gholamiankhah; Samaneh Mostafapour; Nouraddin Abdi Goushbolagh; Seyedjafar Shojaerazavi; Parvaneh Layegh; Seyyed Mohammad Tabatabaei; Hossein Arabi

arXiv · 2104.02042

Automated lung segmentation from CT images of normal and COVID-19 pneumonia patients

Faeze Gholamiankhah·Samaneh Mostafapour·Nouraddin Abdi Goushbolagh·Seyedjafar Shojaerazavi·Parvaneh Layegh·Seyyed Mohammad Tabatabaei·Hossein Arabi

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Abstract

Automated semantic image segmentation is an essential step in quantitative image analysis and disease diagnosis. This study investigates the performance of a deep learning-based model for lung segmentation from CT images for normal and COVID-19 patients. Chest CT images and corresponding lung masks of 1200 confirmed COVID-19 cases were used for training a residual neural network. The reference lung masks were generated through semi-automated/manual segmentation of the CT images. The performance of the model was evaluated on two distinct external test datasets including 120 normal and COVID-19 subjects, and the results of these groups were compared to each other. Different evaluation metrics such as dice coefficient (DSC), mean absolute error (MAE), relative mean HU difference, and relative volume difference were calculated to assess the accuracy of the predicted lung masks. The proposed deep learning method achieved DSC of 0.980 and 0.971 for normal and COVID-19 subjects, respectively, demonstrating significant overlap between predicted and reference lung masks. Moreover, MAEs of 0.037 HU and 0.061 HU, relative mean HU difference of -2.679% and -4.403%, and relative volume difference of 2.405% and 5.928% were obtained for normal and COVID-19 subjects, respectively. The comparable performance in lung segmentation of the normal and COVID-19 patients indicates the accuracy of the model for the identification of the lung tissue in the presence of the COVID-19 induced infections (though slightly better performance was observed for normal patients). The promising results achieved by the proposed deep learning-based model demonstrated its reliability in COVID-19 lung segmentation. This prerequisite step would lead to a more efficient and robust pneumonia lesion analysis.

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Faeze Gholamiankhah, Samaneh Mostafapour, Nouraddin Abdi Goushbolagh, Seyedjafar Shojaerazavi, Parvaneh Layegh, Seyyed Mohammad Tabatabaei, Hossein Arabi. 2021-04-05. Automated lung segmentation from CT images of normal and COVID-19 pneumonia patients. https://arxiv.org/abs/2104.02042

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