Combining fluorescence fluctuations and photobleaching to quantify surface density

Abstract

We establish a method, called pbFFS for photobleaching Fluctuation Fluorescence Spectroscopy, which aims at characterizing molecules or particles labelled with a unknown distribution or fluorophores. Using photobleaching as a control parameter, pbFFS provides information on the distribution of labels and a more reliable estimation of the absolute density or concentration of these molecules. We present a complete theoretical derivation of the pbFFS approach and experimentally apply it to measure the surface density of a monolayer of fluorescently tagged streptavidin molecules that can be used as a base platform for biomimetic systems. The surface density measured by pbFFS is consistent with the results of more standard surface techniques, such as ellipsometry. Compared to those techniques, pbFFS has two main advantages: it enables in situ characterization (no dedicated substrates are required) and is applicable to low masses of adsorbed molecules, as demonstrated here by quantifying the density of biotin-Atto molecules that bind to the streptavidin layer. Besides molecules immobilized on surfaces, we also applied pbFFS to molecules diffusing in solution, to confirm the distribution of labels found on surfaces. Hence, pbFFS provides a set of tools to investigate molecules attached to a variable number of fluorophores, with the aim toquantify either the number of molecules or the distribution of fluorophores, the latter case being especially relevant for oligomerization studies.