SearcharxivSearch

arXiv · 2111.01275

Recurrent neural network models for working memory of continuous variables: activity manifolds, connectivity patterns, and dynamic codes

Abstract

Many daily activities and psychophysical experiments involve keeping multiple items in working memory. When items take continuous values (e.g., orientation, contrast, length, loudness) they must be stored in a continuous structure of appropriate dimensions. We investigate how this structure is represented in neural circuits by training recurrent networks to report two previously shown stimulus orientations. We find the activity manifold for the two orientations resembles a Clifford torus. Although a Clifford and standard torus (the surface of a donut) are topologically equivalent, they have important functional differences. A Clifford torus treats the two orientations equally and keeps them in orthogonal subspaces, as demanded by the task, whereas a standard torus does not. We find and characterize the connectivity patterns that support the Clifford torus. Moreover, in addition to attractors that store information via persistent activity, our networks also use a dynamic code where units change their tuning to prevent new sensory input from overwriting the previously stored one. We argue that such dynamic codes are generally required whenever multiple inputs enter a memory system via shared connections. Finally, we apply our framework to a human psychophysics experiment in which subjects reported two remembered orientations. By varying the training conditions of the RNNs, we test and support the hypothesis that human behavior is a product of both neural noise and reliance on the more stable and behaviorally relevant memory of the ordinal relationship between the two orientations. This suggests that suitable inductive biases in RNNs are important for uncovering how the human brain implements working memory. Together, these results offer an understanding of the neural computations underlying a class of visual decoding tasks, bridging the scales from human behavior to synaptic connectivity.

Explore related subjects

Keep this discovery

BibTeXRIS

Christopher J. Cueva, Adel Ardalan, Misha Tsodyks, Ning Qian. 2021-11-01. Recurrent neural network models for working memory of continuous variables: activity manifolds, connectivity patterns, and dynamic codes. https://arxiv.org/abs/2111.01275

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

The Platonic brain bridge hypothesis: human brain networks as an architectural prior for omni models

We propose the Platonic brain bridge hypothesis: omni models, which process video, audio and text jointly like the brain, converge on brain-like representations, and the correspondence is bidirectional. From model to brain, brain-likeness of seven omni models is stable across participants, and our encoding models on their internal hidden states rank first on the Algonauts 2025 out-of-distribution leaderboard. From brain to model, three contributions follow. Brain-MoE gives seven cortical networks one brain-pretrained expert each and raises held-out accuracy in all 15 model-benchmark pairs by 6.42 percentage points on average. Brain-AVQA builds questions from video clips labelled by the most responsive brain network; the real network-to-expert map exceeds shuffled maps in-domain on all three models. Brain-Scope uses sparse autoencoders to localize the correspondence to a small subset whose removal weakens brain prediction in all three bases tested. Human brain networks are therefore a usable architectural prior for omni models.

q-bio.NC

Degeneracy along the sensorimotor hierarchy: motor control within a framework larger than redundancy

Motor control has described the surplus of solutions available to the nervous system as redundancy, a term that names duplication: interchangeable elements, robust to loss but incapable of differential adaptation. Biology has had a second term for twenty-five years. Degeneracy names elements that are not interchangeable and are nonetheless isofunctional with respect to a given output, and it supports adaptability, since non-identical elements necessarily diverge in some context. Circuit neuroscience has relabeled its own results accordingly, while motor control has kept the older vocabulary. Neuromechanical models, by placing a spinal circuit in the loop with a musculoskeletal apparatus, bring the two traditions onto the same class of objects. We restate the Edelman and Tononi distinction for sensorimotor systems and derive an operational requirement: not the existence of multiple solutions, but their divergence in contexts they were not selected for. Three influential studies each meet part of that requirement and none meets all. We then argue that degeneracy and redundancy coexist along the sensorimotor hierarchy in a proportion that varies continuously, and that this proportion is measurable: computing degeneracy twice for the same configuration, once with muscle activation as the output and once with the movement produced, isolates what the musculoskeletal apparatus contributes. Five predictions follow, with the single outcome that would refute the proposal. We set out the adaptations the measurement requires in a nonlinear, non-stationary, closed-loop system, and what changes for motor control once solutions are no longer assumed equivalent: the question shifts from which rule selects a command to what the repertoire of the system still allows.

q-bio.NC

pyAvalanches: A Python Package for Analyzing Spatiotemporal Propagation in Neuronal Avalanches

The analysis of neuronal avalanches offers insights into brain dynamics utilizing the framework of criticality, but the reproducibility and comparability of studies are limited by the use of fragmented, lab-specific scripts. To address this issue, we introduce pyAvalanches, an open-source Python package providing a standardized, end-to-end pipeline for avalanche analysis from electrophysiological recordings (e.g., electroencephalography-EEG). Starting from the detection of neuronal avalanches the package provides their core statistical characterization, including size and duration distributions. Beyond this, the main aim of pyAvalanches is to characterize the spatiotemporal organization of activity propagation during avalanches. To this end, the core innovation of pyAvalanches is the compuation of Avalanche Transition Matrices (ATMs) to map spatiotemporal propagation patterns. Building on this, the package derives network-based metrics from the ATMs, bridging the study of the topology and organization of the underlying dynamical interactions with network neuroscience adopting the framework of neuronal avalanches. The entire workflow is encapsulated in a modular and scikit-learn compatible architecture. We demonstrate the utility of pyAvalanches through an illustrative group-level analysis on a public resting-state EEG dataset, comparing propagation patterns across different clinical populations. By providing a user-friendly, tested, and extensible tool, pyAvalanches facilitates reproducible research, enables the development of novel avalanche-based biomarkers, and makes complex avalanche analysis accessible to a broader scientific community. The package is fully documented and distributed via the Python Package Index (PyPI).

q-bio.NC