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arXiv · 2202.13965

Precision-medicine-toolbox: An open-source python package for facilitation of quantitative medical imaging and radiomics analysis

Sergey Primakov·Elizaveta Lavrova·Zohaib Salahuddin·Henry C Woodruff·Philippe Lambin
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Abstract

Medical image analysis plays a key role in precision medicine as it allows the clinicians to identify anatomical abnormalities and it is routinely used in clinical assessment. Data curation and pre-processing of medical images are critical steps in the quantitative medical image analysis that can have a significant impact on the resulting model performance. In this paper, we introduce a precision-medicine-toolbox that allows researchers to perform data curation, image pre-processing and handcrafted radiomics extraction (via Pyradiomics) and feature exploration tasks with Python. With this open-source solution, we aim to address the data preparation and exploration problem, bridge the gap between the currently existing packages, and improve the reproducibility of quantitative medical imaging research.

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Sergey Primakov, Elizaveta Lavrova, Zohaib Salahuddin, Henry C Woodruff, Philippe Lambin. 2022-02-28. Precision-medicine-toolbox: An open-source python package for facilitation of quantitative medical imaging and radiomics analysis. https://doi.org/10.1016/j.simpa.2023.100508

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