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arXiv · 2203.04674

Deep learning-based reconstruction of highly accelerated 3D MRI

Sangtae Ahn·Uri Wollner·Graeme McKinnon·Isabelle Heukensfeldt Jansen·Rafi Brada·Dan Rettmann·Ty A. Cashen·John Huston·J. Kevin DeMarco·Robert Y. Shih·Joshua D. Trzasko·Christopher J. Hardy·Thomas K. F. Foo
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Abstract

Purpose: To accelerate brain 3D MRI scans by using a deep learning method for reconstructing images from highly-undersampled multi-coil k-space data Methods: DL-Speed, an unrolled optimization architecture with dense skip-layer connections, was trained on 3D T1-weighted brain scan data to reconstruct complex-valued images from highly-undersampled k-space data. The trained model was evaluated on 3D MPRAGE brain scan data retrospectively-undersampled with a 10-fold acceleration, compared to a conventional parallel imaging method with a 2-fold acceleration. Scores of SNR, artifacts, gray/white matter contrast, resolution/sharpness, deep gray-matter, cerebellar vermis, anterior commissure, and overall quality, on a 5-point Likert scale, were assessed by experienced radiologists. In addition, the trained model was tested on retrospectively-undersampled 3D T1-weighted LAVA (Liver Acquisition with Volume Acceleration) abdominal scan data, and prospectively-undersampled 3D MPRAGE and LAVA scans in three healthy volunteers and one, respectively. Results: The qualitative scores for DL-Speed with a 10-fold acceleration were higher than or equal to those for the parallel imaging with 2-fold acceleration. DL-Speed outperformed a compressed sensing method in quantitative metrics on retrospectively-undersampled LAVA data. DL-Speed was demonstrated to perform reasonably well on prospectively-undersampled scan data, realizing a 2-5 times reduction in scan time. Conclusion: DL-Speed was shown to accelerate 3D MPRAGE and LAVA with up to a net 10-fold acceleration, achieving 2-5 times faster scans compared to conventional parallel imaging and acceleration, while maintaining diagnostic image quality and real-time reconstruction. The brain scan data-trained DL-Speed also performed well when reconstructing abdominal LAVA scan data, demonstrating versatility of the network.

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Sangtae Ahn, Uri Wollner, Graeme McKinnon, Isabelle Heukensfeldt Jansen, Rafi Brada, Dan Rettmann, Ty A. Cashen, John Huston, J. Kevin DeMarco, Robert Y. Shih, Joshua D. Trzasko, Christopher J. Hardy, Thomas K. F. Foo. 2022-03-09. Deep learning-based reconstruction of highly accelerated 3D MRI. https://arxiv.org/abs/2203.04674

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