Searcharxiv⌕ Search
Home/Archive/arXiv

arXiv · 2211.13848

GLM for partially pooled categorical predictors with a case study in biosecurity

Christopher M. Baker·Howard Bondell·Nathaniel Bloomfield·Elena Tartaglia·Andrew P. Robinson
View original source ↗Read source document ↗Export metadata ↓

Abstract

National governments use border information to efficiently manage the biosecurity risk presented by travel and commerce. In the Australian border biosecurity system, data about cargo consignments are collected from records of directions: that is, the records of actions taken by the biosecurity regulator. This data collection is complicated by the way directions for a given entry are recorded. An entry is a collection of import lines where each line is a single type of item or commodity. Analysis is simple when the data are recorded in line mode: the directions are recorded individually for each line. The challenge comes when data are recorded in container mode, because the same direction is recorded against each line in the entry. In other words, if at least one line in an entry has a non-compliant inspection result, then all lines in that entry are recorded as non-compliant. Therefore, container mode data creates a challenge for estimating the probability that certain items are non-compliant, because matching the records of non-compliance to the line information is impossible. We develop a statistical model to use container mode data to help inform biosecurity risk of items. We use asymptotic analysis to estimate the value of container mode data compared to line mode data, do a simulation study to verify that we can accurately estimate parameters in a large dataset, and we apply our methods to a real dataset, for which important information about the risk of non-compliance is recovered using the new model.

Explore related subjects

stat.AP

Keep this discovery

BibTeXRIS

Christopher M. Baker, Howard Bondell, Nathaniel Bloomfield, Elena Tartaglia, Andrew P. Robinson. 2022-11-25. GLM for partially pooled categorical predictors with a case study in biosecurity. https://arxiv.org/abs/2211.13848

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

arXiv2026

Privacy-Preserving Causal Meta-Mediation Analysis with Survival Outcomes

Privacy and data-governance constraints often prevent pooling individual-level data across studies, limiting the use of conventional approaches for causal media- tion analysis in multicenter settings. We propose a federated causal meta-mediation framework for right-censored time-to-event outcomes that enables collaborative es- timation without sharing individual-level data. Our framework targets natural indirect effects in a prespecified population by combining information on mediator and outcome mechanisms across distributed data sources. A site-by-site identifi- cation strategy further allows heterogeneity across data sources to be character- ized, with a variance decomposition separating outcome-related, mediator-related, and interaction components. We develop federated one-step and targeted maxi- mum likelihood estimators that accommodate data-adaptive and machine-learning methods for nuisance-function estimation. The finite-sample performance of the proposed estimators is evaluated through numerical simulations. To illustrate the practical utility of the framework, we apply it on data from the French National Health Data System to evaluate the role of methotrexate coprescription in explain- ing the effect of TNFi versus IL-12/23 inhibitor therapy on treatment persistence among psoriatic patients.

stat.AP↗
arXiv2026

Geospatial Foundation Models Capture Health-Relevant Dimensions of Place Beyond Conventional Social Risk Indices

Area-based social risk indices summarize residents' socioeconomic conditions but incompletely capture physical features of place that may affect health. We evaluated whether numerical representations of physical place produced by four geospatial foundation model families from 2022 satellite data explained residual variance in tract-level associations between the Area Deprivation Index, Social Deprivation Index, and Social Vulnerability Index with health outcomes. We used LightGBM to predict variables from the American Community Survey and 40 chronic disease and health-behavior outcomes from CDC PLACES across 82,646 census tracts in the contiguous United States, evaluating performance across 10 held-out states. Among survey variables, models were moderately predictive of some variables including housing type (R-squared up to 0.54) but weak for disability, unemployment, and income disparity. For health outcomes, models explained up to 54% of variance left unexplained by social risk indices, with the largest gains for annual checkups, arthritis, and high blood pressure. Mean total variance explained by geospatial foundation models across the 40 health-related outcomes increased from 0.31 in the smallest tract-size decile to 0.39 in the largest. Geospatial foundation models capture health-relevant features of place not represented by conventional social risk indices and may usefully augment them in epidemiological analyses.

stat.AP↗
arXiv2026

A spatiotemporal negative binomial model with dynamic dispersion: An application to Tuberculosis infections

Tuberculosis (TB) remains a critical public health concern in Brazil, characterized by pronounced spatial heterogeneity and fluctuating temporal volatility. In this paper, we study monthly TB notifications across 61 microregions of Sao Paulo state from 2001 to 2024. To do this, we introduce a negative binomial spatial integer-valued generalized autoregressive conditional heteroskedastic (INGARCH) model featuring jointly dynamic conditional means and time-varying dispersion. To capture inter-regional spillovers, we incorporate both discrete adjacency structures and a novel continuous distance-based formulation leveraging the Matern correlation function. Parameter estimation via conditional maximum likelihood employs a two-step profile-likelihood iterative scheme, demonstrating solid finite-sample performance in simulation studies. Applied to the Sao Paulo TB surveillance data, the framework substantially outperforms standard Poisson and fixed-dispersion spatiotemporal baselines in empirical fit and uncertainty quantification, maintaining nominal 95% predictive coverage across both dense metropolitan centers and rural microregions. Our results reveal marked spatial heterogeneity in baseline incidence, dynamic overdispersion driven by localized outbreaks, and short-range spatial interaction decay. By accurately modeling spatiotemporal volatility, the proposed methodology provides a robust statistical tool to support public health surveillance, policy-making, and resource allocation.

stat.AP↗