Evolutionary Shaping of Low-Dimensional Path Facilitates Robust and Plastic Switching Between Phenotypes

Ayaka Sakata; Kunihiko Kaneko

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arXiv · 2304.11437

Evolutionary Shaping of Low-Dimensional Path Facilitates Robust and Plastic Switching Between Phenotypes

Ayaka Sakata·Kunihiko Kaneko

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Abstract

Biological systems must be robust for stable function against perturbations, but robustness alone is not sufficient. The ability to switch between appropriate states (phenotypes) in response to different conditions is essential for biological functions. How are robustness and plasticity simultaneously acquired through evolution? We examine the evolution of genotypes that realize plastic switching between two phenotypes upon external inputs, as well as stationary expressions of phenotypes. We introduce a statistical physics model consisting of spins, with active and regulatory sites, which are distinct from each other. We represent the phenotype and genotype as spin configurations and the spin-spin interactions, respectively. The fitness for selection is given so that it takes a higher value as more of the active sites take two requested spin configurations depending on the regulation. We numerically evolve the interaction matrix by changing them with mutations and selection of those with higher fitness. Our numerical simulations show that characteristic genotypes evolve slightly above the transition temperature between replica symmetric and replica symmetry breaking phase. These genotypes shape two spin configurations separately depending on the regulation, where the two phenotypes are dominantly represented by the genotypes' first and second eigenmodes, and smooth switching of two phenotypes are achieved by following a one-dimensional path connecting the two phenotypes. Upon changes in regulations, spin configurations are attracted to this path, which allows for robust and plastic switching between the two phenotypes. The statistical-physics analysis show that the free energy landscape has a valley along the switching path. Our finding indicates that the compatibility of the robustness and plasticity is acquired by the evolution of the low-dimensionality in the phenotype space.

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Ayaka Sakata, Kunihiko Kaneko. 2023-04-22. Evolutionary Shaping of Low-Dimensional Path Facilitates Robust and Plastic Switching Between Phenotypes. https://arxiv.org/abs/2304.11437

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