TRUSTED: The Paired 3D Transabdominal Ultrasound and CT Human Data for Kidney Segmentation and Registration Research

William Ndzimbong; Cyril Fourniol; Loic Themyr; Nicolas Thome; Yvonne Keeza; Beniot Sauer; Pierre-Thierry Piechaud; Arnaud Mejean; Jacques Marescaux; Daniel George; Didier Mutter; Alexandre Hostettler; Toby Collins

arXiv · 2310.12646

TRUSTED: The Paired 3D Transabdominal Ultrasound and CT Human Data for Kidney Segmentation and Registration Research

William Ndzimbong·Cyril Fourniol·Loic Themyr·Nicolas Thome·Yvonne Keeza·Beniot Sauer·Pierre-Thierry Piechaud·Arnaud Mejean·Jacques Marescaux·Daniel George·Didier Mutter·Alexandre Hostettler·Toby Collins

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Abstract

Inter-modal image registration (IMIR) and image segmentation with abdominal Ultrasound (US) data has many important clinical applications, including image-guided surgery, automatic organ measurement and robotic navigation. However, research is severely limited by the lack of public datasets. We propose TRUSTED (the Tridimensional Renal Ultra Sound TomodEnsitometrie Dataset), comprising paired transabdominal 3DUS and CT kidney images from 48 human patients (96 kidneys), including segmentation, and anatomical landmark annotations by two experienced radiographers. Inter-rater segmentation agreement was over 94 (Dice score), and gold-standard segmentations were generated using the STAPLE algorithm. Seven anatomical landmarks were annotated, important for IMIR systems development and evaluation. To validate the dataset's utility, 5 competitive Deep Learning models for automatic kidney segmentation were benchmarked, yielding average DICE scores from 83.2% to 89.1% for CT, and 61.9% to 79.4% for US images. Three IMIR methods were benchmarked, and Coherent Point Drift performed best with an average Target Registration Error of 4.53mm. The TRUSTED dataset may be used freely researchers to develop and validate new segmentation and IMIR methods.

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William Ndzimbong, Cyril Fourniol, Loic Themyr, Nicolas Thome, Yvonne Keeza, Beniot Sauer, Pierre-Thierry Piechaud, Arnaud Mejean, Jacques Marescaux, Daniel George, Didier Mutter, Alexandre Hostettler, Toby Collins. 2023-10-19. TRUSTED: The Paired 3D Transabdominal Ultrasound and CT Human Data for Kidney Segmentation and Registration Research. https://arxiv.org/abs/2310.12646

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