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arXiv · 2311.01793

Near-Optimal Quantum Algorithms for Bounded Edit Distance and Lempel-Ziv Factorization

Daniel Gibney·Ce Jin·Tomasz Kociumaka·Sharma V. Thankachan
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Abstract

Classically, the edit distance of two length-$n$ strings can be computed in $O(n^2)$ time, whereas an $O(n^{2-\epsilon})$-time procedure would falsify the Orthogonal Vectors Hypothesis. If the edit distance does not exceed $k$, the running time can be improved to $O(n+k^2)$, which is near-optimal (conditioned on OVH) as a function of $n$ and $k$. Our first main contribution is a quantum $\tilde{O}(\sqrt{nk}+k^2)$-time algorithm that uses $\tilde{O}(\sqrt{nk})$ queries, where $\tilde{O}(\cdot)$ hides polylogarithmic factors. This query complexity is unconditionally optimal, and any significant improvement in the time complexity would resolve a long-standing open question of whether edit distance admits an $O(n^{2-\epsilon})$-time quantum algorithm. Our divide-and-conquer quantum algorithm reduces the edit distance problem to a case where the strings have small Lempel-Ziv factorizations. Then, it combines a quantum LZ compression algorithm with a classical edit-distance subroutine for compressed strings. The LZ factorization problem can be classically solved in $O(n)$ time, which is unconditionally optimal in the quantum setting. We can, however, hope for a quantum speedup if we parameterize the complexity in terms of the factorization size $z$. Already a generic oracle identification algorithm yields the optimal query complexity of $\tilde{O}(\sqrt{nz})$ at the price of exponential running time. Our second main contribution is a quantum algorithm that achieves the optimal time complexity of $\tilde{O}(\sqrt{nz})$. The key tool is a novel LZ-like factorization of size $O(z\log^2n)$ whose subsequent factors can be efficiently computed through a combination of classical and quantum techniques. We can then obtain the string's run-length encoded Burrows-Wheeler Transform (BWT), construct the $r$-index, and solve many fundamental string processing problems in time $\tilde{O}(\sqrt{nz})$.

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Daniel Gibney, Ce Jin, Tomasz Kociumaka, Sharma V. Thankachan. 2023-11-03. Near-Optimal Quantum Algorithms for Bounded Edit Distance and Lempel-Ziv Factorization. https://arxiv.org/abs/2311.01793

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