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arXiv · 2403.18501

HEMIT: H&E to Multiplex-immunohistochemistry Image Translation with Dual-Branch Pix2pix Generator

Chang Bian·Beth Philips·Tim Cootes·Martin Fergie
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Abstract

Computational analysis of multiplexed immunofluorescence histology data is emerging as an important method for understanding the tumour micro-environment in cancer. This work presents HEMIT, a dataset designed for translating Hematoxylin and Eosin (H&E) sections to multiplex-immunohistochemistry (mIHC) images, featuring DAPI, CD3, and panCK markers. Distinctively, HEMIT's mIHC images are multi-component and cellular-level aligned with H&E, enriching supervised stain translation tasks. To our knowledge, HEMIT is the first publicly available cellular-level aligned dataset that enables H&E to multi-target mIHC image translation. This dataset provides the computer vision community with a valuable resource to develop novel computational methods which have the potential to gain new insights from H&E slide archives. We also propose a new dual-branch generator architecture, using residual Convolutional Neural Networks (CNNs) and Swin Transformers which achieves better translation outcomes than other popular algorithms. When evaluated on HEMIT, it outperforms pix2pixHD, pix2pix, U-Net, and ResNet, achieving the highest overall score on key metrics including the Structural Similarity Index Measure (SSIM), Pearson correlation score (R), and Peak signal-to-noise Ratio (PSNR). Additionally, downstream analysis has been used to further validate the quality of the generated mIHC images. These results set a new benchmark in the field of stain translation tasks.

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Chang Bian, Beth Philips, Tim Cootes, Martin Fergie. 2024-03-27. HEMIT: H&E to Multiplex-immunohistochemistry Image Translation with Dual-Branch Pix2pix Generator. https://arxiv.org/abs/2403.18501

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