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arXiv · 2504.17276

HeRB: Heterophily-Resolved Structure Balancer for Graph Neural Networks

Ke-Jia Chen·Wenhui Mu·Zheng Liu
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Abstract

Recent research has witnessed the remarkable progress of Graph Neural Networks (GNNs) in the realm of graph data representation. However, GNNs still encounter the challenge of structural imbalance. Prior solutions to this problem did not take graph heterophily into account, namely that connected nodes process distinct labels or features, thus resulting in a deficiency in effectiveness. Upon verifying the impact of heterophily on solving the structural imbalance problem, we propose to rectify the heterophily first and then transfer homophilic knowledge. To the end, we devise a method named HeRB (Heterophily-Resolved Structure Balancer) for GNNs. HeRB consists of two innovative components: 1) A heterophily-lessening augmentation module which serves to reduce inter-class edges and increase intra-class edges; 2) A homophilic knowledge transfer mechanism to convey homophilic information from head nodes to tail nodes. Experimental results demonstrate that HeRB achieves superior performance on two homophilic and six heterophilic benchmark datasets, and the ablation studies further validate the efficacy of two proposed components.

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Ke-Jia Chen, Wenhui Mu, Zheng Liu. 2025-04-24. HeRB: Heterophily-Resolved Structure Balancer for Graph Neural Networks. https://arxiv.org/abs/2504.17276

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