Efficient Graph Embedding at Scale: Optimizing CPU-GPU-SSD Integration

Abstract

Graph embeddings map graph nodes to continuous vectors and are foundational to community detection, recommendation, and many scientific applications. At billion-scale, however, existing graph embedding systems face a trade-off: they either rely on large in-memory footprints across many GPUs (limited scalability) or repeatedly stream data from disk (incurring severe I/O overhead and low GPU utilization). In this paper, we propose Legend, a lightweight heterogeneous system for graph embedding that systematically redesigns data management across CPU, GPU, and NVMe SSD resources. Legend combines three practical ideas: (1) a prefetch-friendly embedding-loading order that lets GPUs efficiently prefetch necessary embeddings directly from NVMe SSD with low I/O amplification; (2) a high-throughput GPU-SSD direct-access driver tuned for the access patterns of embedding training; and (3) a customized parallel execution strategy that maximizes GPU utilization. Together, these components let Legend store and stream vast embedding data without overprovisioning GPU memory or suffering I/O stalls. Extensive experiments on billion-scale graphs demonstrate that Legend speeds up end-to-end workloads by up to 4.8x versus state-of-the-art systems, and matches their performance on the largest workloads while using only one quarter of the GPUs.