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arXiv · 2506.11567

HoToPy: A toolbox for X-ray holo-tomography in Python

Jens Lucht·Paul Meyer·Leon Merten Lohse·Tim Salditt
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Abstract

We present a Python toolbox for holographic and tomographic X-ray imaging. It comprises a collection of phase retrieval algorithms for the deeply holographic and direct contrast imaging regimes, including non-linear approaches and extended choices of regularization, constraint sets, and optimizers, all implemented with a unified and intuitive interface. Moreover, it features auxiliary functions for (tomographic) alignment, image processing, and simulation of imaging experiments. The capability of the toolbox is illustrated by the example of a catalytic nanoparticle, imaged in the deeply holographic regime at the 'GINIX' instrument of the P10 beamline at the PETRA III storage ring (DESY, Hamburg). Due to its modular design, the toolbox can be used for algorithmic development and benchmarking in a lean and flexible manner, or be interfaced and integrated in the reconstruction pipeline of other synchrotron or XFEL instruments for phase imaging based on propagation.

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Jens Lucht, Paul Meyer, Leon Merten Lohse, Tim Salditt. 2025-06-13. HoToPy: A toolbox for X-ray holo-tomography in Python. https://doi.org/10.1107/s1600577525008550

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