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arXiv · 2506.11896

GlobDB: A comprehensive species-dereplicated microbial genome resource

Daan R. Speth·Nick Pullen·Samuel T. N. Aroney·Benjamin L. Coltman·Jay T. Osvatic·Ben J. Woodcroft·Thomas Rattei·Michael Wagner
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Abstract

Over the past years, substantial numbers of microbial species' genomes have been deposited outside of conventional INSDC databases. The GlobDB aggregates 14 independent genomic catalogues to provide a comprehensive database of species-dereplicated microbial genomes, with consistent taxonomy, annotations, and additional analysis resources. The GlobDB is available at https://globdb.org/.

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Daan R. Speth, Nick Pullen, Samuel T. N. Aroney, Benjamin L. Coltman, Jay T. Osvatic, Ben J. Woodcroft, Thomas Rattei, Michael Wagner. 2025-06-13. GlobDB: A comprehensive species-dereplicated microbial genome resource. https://arxiv.org/abs/2506.11896

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