SearcharxivSearch

arXiv · 2507.05593

Hierarchical Wavepacket Propagation Framework via ML-MCTDH for Molecular Reaction Dynamics

Abstract

This work presents a computational framework for studying reaction dynamics via wavepacket propagation, employing the multiconfiguration time-dependent Hartree (MCTDH) method and its multilayer extension (ML-MCTDH) as the core methodologies. The core idea centers on the concept of modes that combine several coordinates along with their hierarchical separations because the degrees of freedom are too numerous to be efficiently treated as a single mode. First, the system is partitioned into several fragments within the same layer, and these fragments are further decomposed. Repeating this process, a hierarchical separation of modes emerges, until modes of a manageable size are achieved. Accordingly, the coordinates frame can be designed hierarchically. Second, the kinetic energy operator (KEO) is derived as a sum-of-products (SOP) of single-particle differential operators through polyspherical approach, while the potential energy surface (PES) is expressed in a similar SOP form of single-particle potentials (SPPs) through (1) reconstruction approaches using an existing PES or (2) direct approaches based on a computed database. Third, the nuclear wave function is expressed in a multi-layer expansion form, where each term is a product of single-particle functions (SPFs) that are further expanded by the SPFs in deeper layer. This expansion form is also adopted by variational eigensolver for electronic wave function. Finally, the Dirac-Frenkel variational principle leads to a set of working equations whose solutions reproduce reaction dynamics. In addition, the hierarchical framework can be rearranged by the mathematical language of tensor network (TN) or tree tensor network (TTN). In this work, we compare the methods represented by function with those in the form of TN or TTN. We also discuss the limitations of the present framework and propose solutions, providing further perspectives.

Explore related subjects

Keep this discovery

BibTeXRIS

Xingyu Zhang, Qingyong Meng. 2025-07-08. Hierarchical Wavepacket Propagation Framework via ML-MCTDH for Molecular Reaction Dynamics. https://arxiv.org/abs/2507.05593

Cite the original work for its findings. Save a collection to share your selection of sources.

KEEP EXPLORING

Related papers

Breaking Water at Graphene Defects

Water dissociation at solid surfaces underpins processes ranging from corrosion and catalysis to electrochemistry and photovoltaics. Defects often serve as reactive sites for dissociation, yet how solvation influences water dissociation at such sites remains poorly understood. Here, we use state-of-the-art machine-learned interatomic potentials to explore water dissociation at defective graphene-water interfaces. We show that solvation qualitatively changes the reaction mechanism at a graphene single vacancy (SV), opening pathways that are absent for an isolated water molecule. Whereas the gas-phase process proceeds via a single concerted channel, the solvated SV splits water through two competing pathways: a basic route forming SV-H and OH-(aq), and an acidic route forming SV-OH and H3O+(aq). These lower-barrier pathways produce distinct chemisorbed intermediates that enhance graphene-water adsorption. Accordingly, even a simple carbon vacancy gives rise to unexpectedly rich interfacial chemistry, coupling surface chemistry to interfacial charge and wettability, with implications for carbon functionalization and nanofluidic transport.

physics.chem-ph

Comprehensive Study of L-Menthol and Octanoic Acid as a Hydrophobic Eutectic Solvent

Hydrophobic eutectic solvents (HES) based on natural compounds represent promising green alternatives to conventional solvents. In this work, we investigate the physicochemical, structural, and dynamical properties of an ES formed by L-menthol and octanoic acid using a combined experimental and molecular dynamics simulation approach. Five compositions with molar ratios from 1:3 to 3:1 were studied with molecular dynamics simulation in the temperature range 15 degrees C to 35 degrees C. Experimental measurements of density and viscosity in the temperature range from 5 degrees C to 35 degrees C were complemented with results obtained from MD simulations employing the OPLS force field. Structural analyses based on radial distribution functions and Kirkwood-Buff integrals reveal that the dominant interactions in the mixture are hydrogen bonds between L-menthol and octanoic acid molecules. Dynamic properties, including self-diffusion coefficients and hydrogen-bond lifetimes, indicate that intermolecular hydrogen bonds between the two components are stronger and longer-lived than bonds between identical species. These findings provide molecular-level insight into the structure and transport properties of menthol-based ESs relevant for green solvent applications.

physics.chem-ph

More is not always better: Dissociative photoionization limits the EUV absorbing photacid generator pentafluorophenyl triflate in photolithography

Pentafluorophenyl triflate has been explored as a highly absorbing neutral photoacid generator (PAG) candidate for next generation chemically amplified resists used in extreme ultraviolet (EUV) lithography. Although increased fluorination enhances EUV absorption, this study demonstrates that such an approach does not necessarily improve photoacid generation efficiency. Using photoelectron-photoion coincidence (PEPICO) spectroscopy at the 92 eV photon energy of the EUV scanners in combination with quantum chemical calculations, the dissociative photoionization of pentafluorophenyl triflate was systematically investigated. The photoionization mass spectrum reveals extensive fragmentation, with the parent ion contributing only 3.1 % of the total signal and CF$_3^+$ representing the dominant product ion. Computed appearance energies align well with experimental trends and support a sequential fragmentation pathway involving loss of SO$_2$, CF$_3$, and CO. Crucially, none of the major dissociation channels yield precursors capable of forming triflic acid, the strong photoacid required for efficient deprotection reactions in chemically amplified resists. Combined with previous dissociative electron attachment studies indicating similarly unfavorable fragmentation, the results demonstrate that despite its high EUV absorption cross section, pentafluorophenyl triflate is unsuitable as a PAG for EUV lithography. The findings highlight the importance of understanding fundamental photoionization and electron interaction mechanisms to guide the rational design of next generation high performance EUV photoresists.

physics.chem-ph