Real-time deep learning phase imaging flow cytometer reveals blood cell aggregate biomarkers for haematology diagnostics

Kerem Delikoyun; Qianyu Chen; Liu Wei; Si Ko Myo; Johannes Krell; Martin Schlegel; Win Sen Kuan; John Tshon Yit Soong; Gerhard Schneider; Clarissa Prazeres da Costa; Percy A. Knolle; Laurent Renia; Matthew Edward Cove; Hwee Kuan Lee; Klaus Diepold; Oliver Hayden

arXiv · 2508.09215

Real-time deep learning phase imaging flow cytometer reveals blood cell aggregate biomarkers for haematology diagnostics

Kerem Delikoyun·Qianyu Chen·Liu Wei·Si Ko Myo·Johannes Krell·Martin Schlegel·Win Sen Kuan·John Tshon Yit Soong·Gerhard Schneider·Clarissa Prazeres da Costa·Percy A. Knolle·Laurent Renia·Matthew Edward Cove·Hwee Kuan Lee·Klaus Diepold·Oliver Hayden

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Abstract

While analysing rare blood cell aggregates remains challenging in automated haematology, they could markedly advance label-free functional diagnostics. Conventional flow cytometers efficiently perform cell counting with leukocyte differentials but fail to identify aggregates with flagged results, requiring manual reviews. Quantitative phase imaging flow cytometry captures detailed aggregate morphologies, but clinical use is hampered by massive data storage and offline processing. Incorporating hidden biomarkers into routine haematology panels would significantly improve diagnostics without flagged results. We present RT-HAD, an end-to-end deep learning-based image and data processing framework for off-axis digital holographic microscopy (DHM), which combines physics-consistent holographic reconstruction and detection, representing each blood cell in a graph to recognize aggregates. RT-HAD processes >30 GB of image data on-the-fly with turnaround time of <1.5 min and error rate of 8.9% in platelet aggregate detection, which matches acceptable laboratory error rates of haematology biomarkers and solves the big data challenge for point-of-care diagnostics.

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q-bio.QM cs.AI cs.CV cs.LG eess.IV

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Kerem Delikoyun, Qianyu Chen, Liu Wei, Si Ko Myo, Johannes Krell, Martin Schlegel, Win Sen Kuan, John Tshon Yit Soong, Gerhard Schneider, Clarissa Prazeres da Costa, Percy A. Knolle, Laurent Renia, Matthew Edward Cove, Hwee Kuan Lee, Klaus Diepold, Oliver Hayden. 2025-08-11. Real-time deep learning phase imaging flow cytometer reveals blood cell aggregate biomarkers for haematology diagnostics. https://arxiv.org/abs/2508.09215

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