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arXiv · 2509.08366

kNNSampler: Stochastic Imputations for Recovering Missing Value Distributions

Parastoo Pashmchi·Jérôme Benoit·Motonobu Kanagawa
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Abstract

We study a missing-value imputation method, termed kNNSampler, that imputes a given unit's missing response by randomly sampling from the observed responses of the $k$ most similar units to the given unit in terms of the observed covariates. This method can sample unknown missing values from their distributions, quantify the uncertainties of missing values, and be readily used for multiple imputation. Unlike popular kNNImputer, which estimates the conditional mean of a missing response given an observed covariate, kNNSampler is theoretically shown to estimate the conditional distribution of a missing response given an observed covariate. Experiments illustrate the performance of kNNSampler. The code for kNNSampler is made publicly available (https://github.com/SAP/knn-sampler).

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Parastoo Pashmchi, Jérôme Benoit, Motonobu Kanagawa. 2025-09-10. kNNSampler: Stochastic Imputations for Recovering Missing Value Distributions. https://arxiv.org/abs/2509.08366

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