WarpPINN-fibers: improved cardiac strain estimation from cine-MR with physics-informed neural networks

Abstract

The contractile motion of the heart is strongly determined by the distribution of the fibers that constitute cardiac tissue. Strain analysis informed with the orientation of fibers allows to describe several pathologies that are typically associated with impaired mechanics of the myocardium, such as cardiovascular disease. Several methods have been developed to estimate strain-derived metrics from traditional imaging techniques. However, the physical models underlying these methods do not include fiber mechanics, restricting their capacity to accurately explain cardiac function. In this work, we introduce WarpPINN-fibers, a physics-informed neural network framework to accurately obtain cardiac motion and strains enhanced by fiber information. We train our neural network to satisfy a hyper-elastic model and promote fiber contraction with the goal to predict the deformation field of the heart from cine magnetic resonance images. For this purpose, we build a loss function composed of three terms: a data-similarity loss between the reference and the warped template images, a regularizer enforcing near-incompressibility of cardiac tissue and a fiber-stretch penalization that controls strain in the direction of synthetically produced fibers. We show that our neural network improves the former WarpPINN model and effectively controls fiber stretch in a synthetic phantom experiment. Then, we demonstrate that WarpPINN-fibers outperforms alternative methodologies in landmark-tracking and strain curve prediction for a cine-MRI benchmark with a cohort of 15 healthy volunteers. We expect that our method will enable a more precise quantification of cardiac strains through accurate deformation fields that are consistent with fiber physiology, without requiring imaging techniques more sophisticated than MRI.