From Scope to Script: An Automated Report Generation Model for Gastrointestinal Endoscopy

Evandros Kaklamanos; Kristjana Kristinsdottir; Jonathan Huang; Dustin Carlson; Rajesh Keswani; John Pandolfino; Mozziyar Etemadi

arXiv · 2510.03543

From Scope to Script: An Automated Report Generation Model for Gastrointestinal Endoscopy

Evandros Kaklamanos·Kristjana Kristinsdottir·Jonathan Huang·Dustin Carlson·Rajesh Keswani·John Pandolfino·Mozziyar Etemadi

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Abstract

Endoscopic procedures such as esophagogastroduodenoscopy (EGD) and colonoscopy play a critical role in diagnosing and managing gastrointestinal (GI) disorders. However, the documentation burden associated with these procedures place significant strain on gastroenterologists, contributing to inefficiencies in clinical workflows and physician burnout. To address this challenge, we propose a novel automated report generation model that leverages a transformer-based vision encoder and text decoder within a two-stage training framework. In the first stage, both components are pre-trained on image/text caption pairs to capture generalized vision-language features, followed by fine-tuning on images/report pairs to generate clinically meaningful findings. Our approach not only streamlines the documentation process but also holds promise for reducing physician workload and improving patient care.

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Evandros Kaklamanos, Kristjana Kristinsdottir, Jonathan Huang, Dustin Carlson, Rajesh Keswani, John Pandolfino, Mozziyar Etemadi. 2025-10-03. From Scope to Script: An Automated Report Generation Model for Gastrointestinal Endoscopy. https://arxiv.org/abs/2510.03543

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