3D printed waveguides for optogenetics applications: design optimization and optical characterization

Giorgio Scordo; Kostas Kanellopulos; Surangrat Thongkorn; Samuel Tavares da Silva Maraschin; Kambiz Ghaseminasab; Evgeniy Shkondin; Deepshika Arasu; Stephan Sylvest Keller; Arto Rainer Heiskanen; Marta Perez Pereira; Jenny Emnéus

arXiv · 2511.15420

3D printed waveguides for optogenetics applications: design optimization and optical characterization

Giorgio Scordo·Kostas Kanellopulos·Surangrat Thongkorn·Samuel Tavares da Silva Maraschin·Kambiz Ghaseminasab·Evgeniy Shkondin·Deepshika Arasu·Stephan Sylvest Keller·Arto Rainer Heiskanen·Marta Perez Pereira·Jenny Emnéus

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Abstract

Optogenetics has emerged as a powerful tool for disease modeling, enabling precise control of cellular activities through light stimulation and providing a valuable insights into disease mechanisms and therapeutic possibilities. Innovative materials and technologies such as micro-LEDs, optical fibers and micro/nano probes have been developed to allow precise spatial and temporal control of light delivery to target cells. Recent advances in 3D printing have further enhanced optogenetic applications by enabling the fabrication of implantable, customizable, and miniaturized light stimulation systems with high spatial resolution. In this study, we introduce a novel concept of a 3D printed light delivery system for brain organoid stimulation exploring the capabilities of projection microstereolithography (P$\mu$SL). We characterized the optical properties of the high-resolution acrylate-based 3D print resin, i.e., refractive index and extinction coefficient, to evaluate if the light transmission efficiency might limit the performance of the optogenetic stimulation systems. Finite element method simulations were employed to optimize the 3D printed design. An optogenetic setup was developed for optimal light delivery, and initial tests with optogenetically modified cells showed light-induced dopamine release with a stimulation efficiency of 2.8\%, confirming the 3D printed waveguide functionality and guiding future optimization. Our results demonstrate that this light stimulation tool offers strong potential for advancing customizable optogenetic applications.

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Giorgio Scordo, Kostas Kanellopulos, Surangrat Thongkorn, Samuel Tavares da Silva Maraschin, Kambiz Ghaseminasab, Evgeniy Shkondin, Deepshika Arasu, Stephan Sylvest Keller, Arto Rainer Heiskanen, Marta Perez Pereira, Jenny Emnéus. 2025-11-19. 3D printed waveguides for optogenetics applications: design optimization and optical characterization. https://arxiv.org/abs/2511.15420

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