QSMnet-INR: Single-Orientation Quantitative Susceptibility Mapping via Implicit Neural Representation in k-Space

Abstract

Quantitative Susceptibility Mapping (QSM) quantifies tissue magnetic susceptibility from magnetic-resonance phase data and plays a crucial role in brain microstructure imaging, iron-deposition assessment, and neurological-disease research. However, single-orientation QSM inversion remains highly ill-posed because the dipole kernel exhibits a cone-null region in the Fourier domain, leading to streaking artifacts and structural loss. To overcome this limitation, we propose QSMnet-INR, a deep, physics-informed framework that integrates an Implicit Neural Representation (INR) into the k-space domain. The INR module continuously models multi-directional dipole responses and explicitly completes the cone-null region, while a frequency-domain residual-weighted Dipole Loss enforces physical consistency. The overall network combines a 3D U-Net-based QSMnet backbone with the INR module through alternating optimization for end-to-end joint training. Experiments on the 2016 QSM Reconstruction Challenge, a multi-orientation GRE dataset, and both in-house and public single-orientation clinical data demonstrate that QSMnet-INR consistently outperforms conventional and recent deep-learning approaches across multiple quantitative metrics. The proposed framework shows notable advantages in structural recovery within cone-null regions and in artifact suppression. Ablation studies further confirm the complementary contributions of the INR module and Dipole Loss to detail preservation and physical stability. Overall, QSMnet-INR effectively alleviates the ill-posedness of single-orientation QSM without requiring multi-orientation acquisition, achieving high accuracy, robustness, and strong cross-scenario generalization-highlighting its potential for clinical translation.