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arXiv · 2512.21397

Tree rearrangement graphs admit paths of decreasing Robinson-Foulds distance

Lena Collienne·Frederick A Matsen IV
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Abstract

Tree rearrangements such as Nearest Neighbor Interchange (NNI) and Subtree Prune and Regraft (SPR) are commonly used to explore phylogenetic treespace. Computing distances based on them, however, is often intractable, so the efficiently computable Robinson-Foulds (RF) distance is used in practice. We investigate how the RF distance behaves along paths in the NNI and SPR graphs, where trees are nodes and edges represent single rearrangements. We show that any two trees are connected by a path along which the RF distance to the target decreases monotonically in the NNI graph and strictly in the SPR graph; we also show that a strictly decreasing NNI path does not always exist.

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Lena Collienne, Frederick A Matsen IV. 2025-12-24. Tree rearrangement graphs admit paths of decreasing Robinson-Foulds distance. https://arxiv.org/abs/2512.21397

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