Restoring information in aged gene regulatory networks by single knock-ins

Ryan LeFebre; Fabrisia Ambrosio; Andrew Mugler

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arXiv · 2601.04016

Restoring information in aged gene regulatory networks by single knock-ins

Ryan LeFebre·Fabrisia Ambrosio·Andrew Mugler

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Abstract

A hallmark of aging is loss of information in gene regulatory networks. These networks are tightly connected, raising the question of whether information could be restored by perturbing single genes. We develop a simple theoretical framework for information transmission in gene regulatory networks that describes the information gained or lost when a gene is "knocked in" (exogenously expressed). Applying the framework to gene expression data from muscle cells in young and old mice, we find that single knock-ins can restore network information by up to 10%. Our work advances the study of information flow in networks and identifies potential gene targets for rejuvenation.

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Ryan LeFebre, Fabrisia Ambrosio, Andrew Mugler. 2026-01-07. Restoring information in aged gene regulatory networks by single knock-ins. https://arxiv.org/abs/2601.04016

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