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arXiv · 2601.04836

Arboreal Networks and Ultrametrics

Katharina T. Huber·Vincent Moulton·Guillaume E. Scholz
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Abstract

Ultametrics are an important class of distances used in applications such as phylogenetics, clustering and classification theory. Ultrametrics are essentially distances that can be represented by an edge-weighted rooted tree so that all of the distances in the tree from the root to any leaf of the tree are equal. In this paper, we introduce a generalization of ultrametrics called arboreal ultrametrics which have applications in phylogenetics and also arise in the theory of distance-hereditary graphs. These are partial distances, that is distances that are not necessarily defined for every pair of elements in the groundset, that can be represented by an ultrametric arboreal network, that is, an edge-weighted rooted network whose underlying graph is a tree. As with ultrametrics all of the distances in the ultrametric arboreal network from any root to any leaf below it are are equal but, in contrast, the network may have more than one root. In our two main results we characterize when a partial distance is an arboreal ultrametric as well as proving that, somewhat surprisingly, given any unrooted edge-weighted phylogenetic tree there is a necessarily unique way to insert roots into this tree so as to obtain an arboreal ultrametric.

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Katharina T. Huber, Vincent Moulton, Guillaume E. Scholz. 2026-01-08. Arboreal Networks and Ultrametrics. https://arxiv.org/abs/2601.04836

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