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arXiv · 2602.18897

HEHRGNN: A Unified Embedding Model for Knowledge Graphs with Hyperedges and Hyper-Relational Edges

Rajesh Rajagopalamenon·Unnikrishnan Cheramangalath
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Abstract

Knowledge Graph(KG) has gained traction as a machine-readable organization of real-world knowledge for analytics using artificial intelligence systems. Graph Neural Network(GNN), is proven to be an effective KG embedding technique that enables various downstream tasks like link prediction, node classification, and graph classification. The focus of research in both KG embedding and GNNs has been mostly oriented towards simple graphs with binary relations. However, real-world knowledge bases have a significant share of complex and n-ary facts that cannot be represented by binary edges. More specifically, real-world knowledge bases are often a mix of two types of n-ary facts - (i) that require hyperedges and (ii) that require hyper-relational edges. Though there are research efforts catering to these n-ary fact types, they are pursued independently for each type. We propose $H$yper$E$dge $H$yper-$R$elational edge $GNN$(HEHRGNN), a unified embedding model for n-ary relational KGs with both hyperedges and hyper-relational edges. The two main components of the model are i)HEHR unified fact representation format, and ii)HEHRGNN encoder, a GNN-based encoder with a novel message propagation model capable of capturing complex graph structures comprising both hyperedges and hyper-relational edges. The experimental results of HEHRGNN on link prediction tasks show its effectiveness as a unified embedding model, with inductive prediction capability, for link prediction across real-world datasets having different types of n-ary facts. The model also shows improved link prediction performance over baseline models for hyperedge and hyper-relational datasets.

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Rajesh Rajagopalamenon, Unnikrishnan Cheramangalath. 2026-02-21. HEHRGNN: A Unified Embedding Model for Knowledge Graphs with Hyperedges and Hyper-Relational Edges. https://arxiv.org/abs/2602.18897

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