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arXiv · 2605.31462

Cooperative Conformational Transitions in Macromolecules under Mechanical Stretching. An Exactly Solved Model for Single Molecule Experiments

Javier Orradre·Pablo M. Blanco·Sergio Madurga·Marina I. Giannotti·Francesc Mas·Josep L. Garcés
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Abstract

The stretching behavior of linear macromolecules undergoing conformational transitions is investigated. An exact solution is provided for a two-state system within the elastic freely jointed chain model. This minimal framework contains the smallest set of parameters required to describe such transitions: two Kuhn lengths, two elastic force constants, a free energy difference between both states and a nearest-neighbor interaction energy accounting for cooperativity. Explicit analytical expressions are derived for the chain extension and the probabilities of each state as functions of the applied force.The approach accurately reproduces the experimental force-extension curves of poly(ethylene-glycol) (PEG) and hyaluronic acid (HA), revealing no cooperativity for PEG and negative cooperativity for HA. It also describes the B-DNA to S-DNA conformational transition, a process that exhibits positive cooperativity.We analyze the mathematical conditions required for a transition and identify two fundamental driving mechanisms: differences in Kuhn lengths and differences in force constants.Extensions of the model to systems with more than two conformational states per Kuhn segment are also discussed. The results presented here apply equally to transitions that are intrinsic to the macromolecular structure or induced by ligand-receptor interactions, unifying both cases within a single thermodynamically consistent framework.

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Javier Orradre, Pablo M. Blanco, Sergio Madurga, Marina I. Giannotti, Francesc Mas, Josep L. Garcés. 2026-05-29. Cooperative Conformational Transitions in Macromolecules under Mechanical Stretching. An Exactly Solved Model for Single Molecule Experiments. https://arxiv.org/abs/2605.31462

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