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arXiv · 2606.20283

Boundary Embedding Shaping with Adaptive Contrastive Learning for Graph Structural Disentanglement

Jiaqing Chen·Zidu Yin·Yichao Cai·Yuhang Liu·Zhen Zhang·Dong Gong·Javen Qinfeng Shi
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Abstract

Graph neural networks (GNNs) excel at aggregating neighbor information for classification, yet their performance is hindered by graph structural entanglement, where spurious correlations from semantically irrelevant neighbors contaminate node embeddings. This challenge is most acute for nodes near class boundaries in the embedding space, where amplified structural noise blurs decision boundaries and destabilizes predictions. Existing robust GNN methods largely treat all nodes uniformly, ignoring boundary vulnerabilities. In this paper, to improve classification performance, we tackle graph structural disentanglement by identifying boundary-region entanglement as the primary bottleneck and propose Boundary Embedding Shaping (BES), an adaptive contrastive learning GNN plug-in module that selectively suppresses spurious structural noise at decision boundaries with minimal model parameter perturbation. Extensive experiments demonstrate that BES consistently improves boundary discrimination and outperforms existing leading methods. Notably, BES boosts GCN performance by an average of 3.3% in node classification (up to 5.0% on WikiCS) and achieves superior accuracy in link prediction.

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Jiaqing Chen, Zidu Yin, Yichao Cai, Yuhang Liu, Zhen Zhang, Dong Gong, Javen Qinfeng Shi. 2026-06-18. Boundary Embedding Shaping with Adaptive Contrastive Learning for Graph Structural Disentanglement. https://arxiv.org/abs/2606.20283

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